Package: cpam 0.1.3.9000

cpam: Changepoint Additive Models for Time Series Omics Data

Provides a comprehensive framework for time series omics analysis, integrating changepoint detection, smooth and shape-constrained trends, and uncertainty quantification. It supports gene- and transcript-level inferences, p-value aggregation for improved power, and both case-only and case-control designs. It includes an interactive 'shiny' interface. The methods are described in Yates et al. (2024) <doi:10.1101/2024.12.22.630003>.

Authors:Luke Yates [aut, cre, cph], Michael Charleston [aut], Jazmine Humphreys [aut], Steven Smith [aut]

cpam_0.1.3.9000.tar.gz
cpam_0.1.3.9000.zip(r-4.5)cpam_0.1.3.9000.zip(r-4.4)cpam_0.1.3.9000.zip(r-4.3)
cpam_0.1.3.9000.tgz(r-4.5-any)cpam_0.1.3.9000.tgz(r-4.4-any)cpam_0.1.3.9000.tgz(r-4.3-any)
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cpam.pdf |cpam.html
cpam/json (API)
NEWS

# Install 'cpam' in R:
install.packages('cpam', repos = c('https://l-a-yates.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/l-a-yates/cpam/issues

Pkgdown site:https://l-a-yates.github.io

On CRAN:

Conda:

5.06 score 1 stars 10 exports 71 dependencies

Last updated 1 days agofrom:aef8ae80c8. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 14 2025
R-4.5-winOKMar 14 2025
R-4.5-macOKMar 14 2025
R-4.5-linuxOKMar 14 2025
R-4.4-winOKMar 14 2025
R-4.4-macOKMar 14 2025
R-4.4-linuxOKMar 14 2025
R-4.3-winOKMar 14 2025
R-4.3-macOKMar 14 2025

Exports:%>%compute_p_valuesestimate_changepointplot_clusterplot_cpamprepare_cpamresultsselect_shapets_filtervisualise

Dependencies:base64encBHbslibcachemclicolorspacecommonmarkcpp11crayondigestdplyredgeRfansifarverfastmapfontawesomefsgenericsggplot2gluegtablehtmltoolshttpuvisobandjquerylibjsonlitelabelinglaterlatticelifecyclelimmalocfitmagrittrMASSMatrixmatrixStatsmemoisemgcvmimemunsellmvnfastnlmepbmcapplypillarpkgconfigpromisespurrrR6rappdirsRColorBrewerRcppRcppArmadillorlangsassscalesscamshinyshinyjssourcetoolsstatmodstringistringrtibbletidyrtidyselecttximportutf8vctrsviridisLitewithrxtable

cpam

Rendered fromcpam.Rmdusingknitr::rmarkdownon Mar 14 2025.

Last update: 2025-03-06
Started: 2025-02-28